DreALTA0024416-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010956 | sh3glb1b
Description
SH3-domain GRB2-like endophilin B1b [Source:ZFIN;Acc:ZDB-GENE-030131-6851]
Coordinates
chr2:16512884-16516444:+
Coord C1 exon
chr2:16512884-16512976
Coord A exon
chr2:16516356-16516405
Coord C2 exon
chr2:16516406-16516444
Length
50 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ACCTCTCTGATTTCCCCCAGTTC
3' ss Score
9.93
Exon sequences
Seq C1 exon
AAAGAACGGAAACTGCTTCAGAATAAGCGTCTAGATTTGGATGCAGCTAAAAACAGAATGAAGAAGGCTAGAGTGGCTGATGCTCGCTCTGCA
Seq A exon
TTCTCTCTCATTCTGTGTCTCTCTGTCTGCTTGCCTGCCTCCGCCTGAAG
Seq C2 exon
GAGCTGAACTGCAGTCCTCCGCTGGGAGAGGAGTATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010956-4-9,4-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(12.4=100)
A:
NA
C2:
PF0311413=BAR=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAACGGAAACTGCTTCAGA
R:
CACATACTCCTCTCCCAGCGG
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]