DreALTA0024543-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52053789-52054119:-
Coord C1 exon
chr16:52053958-52054119
Coord A exon
chr16:52053831-52053872
Coord C2 exon
chr16:52053789-52053830
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
GTAATGAGTGCTTCATAAAGCAG
3' ss Score
-3.48
Exon sequences
Seq C1 exon
GCACCGGGTCGTCGATCTCGGACAACATCTGAATCGTCCAATCATTCTGGCCGGGAACGCAGCAGCTCATTTGCCAATCAGGGATCTCCACCCCCTCCACCAATCCCAGAGGCTCCACCACAGGATGTGCCAGAGAGAACCAAGAAAGACTCTCCTAAAAAA
Seq A exon
CAGGGATCTGGTGGCGGCTTGCTGACCTGGCTGTTTCCAAAG
Seq C2 exon
CGGAAGAATGAAGCACATCTTCCAGACGACAAAAACAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300-26-26,26-25,26-24-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGCTCATTTGCCAATC
R:
TGTCGTCTGGAAGATGTGCTT
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]