DreALTA0025693-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000092778 | si:ch73-338o16.4
Description
si:ch73-338o16.4 [Source:ZFIN;Acc:ZDB-GENE-131119-14]
Coordinates
chr3:5187707-5188758:+
Coord C1 exon
chr3:5187707-5188099
Coord A exon
chr3:5188198-5188206
Coord C2 exon
chr3:5188207-5188758
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
AGTGTATTAATAAGTATCAGAAA
3' ss Score
-5.02
Exon sequences
Seq C1 exon
ACTTAGTACTTTTCACTAGCCCAAGTGTCGACCCCTGCTACAACTATACCACTTTGGATGAAGCTCGCCGGTCAACCAGCAATACTGTTTACTATGGAATGTGCGATTATAACGTGAAGTGGAACGGCTGGTACAGGCTGCTCTTGAGTGGTCAGAATGCTCAGATGCCAGAATCCTGTGTTAATCGGACCATGTGTGGCACTGAAGAACCATTTTGGCTTAATAGTTCTCATCCACAGCCGGAGGATGGAGTGGTCACCCGTCAGGTCTGTGTTTCCTCATCGGAAGGCTGTTGTGGTTACACCTCACATCCTATTCGAGTCAAAGCCTGTCCAGGAAATTACTATGTTTATGAGTTTGTCAGGCCAATGTTTTGTGGAGTTTATTGTGCAA
Seq A exon
AAATGTCAG
Seq C2 exon
ATGTTACAGTCTCTTCAACCACAACTACAACATCAAGAACACTAACCACAGCAGCAACATCTAGAACACCAACCACAGCAACAACACCAAGAACACCAACCACAGCAACAACATCAAGAACACCAACTACAGCAGCAACATCTAGAACACCAACTACAGCAACAACATCAAGAACCCCAACTACAGCAACAACATCAAGAACACCAACTACAGCAGCAACTTCTAGAACACCAACTACAGCAACAACATCAAGAACACCAACTACAGCAACAACATCAAGAACACCAAACACAGCAACAACATCAATAACACCAAACACAGCAACAACATCAAGAACACCAAACACTGCAACAACATCAAGAACACCAACTACAGCAACAACATCAATAACACCAAACACAGCAACAACATCAAGAACACCAAACACAGCAACAACATCAAGAACACCAACTACAGCAACAACATCAATAACACCAAACACAGCAACAACATCAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092778-8-12,8-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGGCCAATGTTTTGTGGA
R:
TGTTGCTGCTGTGGTTAGTGT
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]