DreALTA0026155-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000002295 | si:dkey-21p1.3
Description
si:dkey-21p1.3 [Source:ZFIN;Acc:ZDB-GENE-081105-162]
Coordinates
chr8:14843112-14845409:+
Coord C1 exon
chr8:14843112-14843218
Coord A exon
NA
Coord C2 exon
chr8:14845345-14845409
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ATCATTTTGTAAGATTTCAGGAG
3' ss Score
-0.15
Exon sequences
Seq C1 exon
GACACTACTATGTCGATCCTAACCACGGATGTCCTTTTGATGCTCTCCGAGTCTTCTGTAATTTTACTGCCGGTGGTCTAACTTGTGTGTCTCCTGTCCAATCTAAT
Seq A exon
NA
Seq C2 exon
GAGTGTGGCCATCATCAGTGGACAGATCCAAAATGTGGTTTAGTGAGCTTCACAAAGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002295-74-65,74-64-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.4=100)
A:
NA
C2:
PF0141013=COLFI=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCTCTCCGAGTCTTCTGT
R:
CTGTCCACTGATGATGGCCAC
Band lengths:
95-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]