DreALTA0026156-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000002295 | si:dkey-21p1.3
Description
si:dkey-21p1.3 [Source:ZFIN;Acc:ZDB-GENE-081105-162]
Coordinates
chr8:14845338-14845692:+
Coord C1 exon
chr8:14845338-14845409
Coord A exon
chr8:14845492-14845497
Coord C2 exon
chr8:14845498-14845692
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTGATTATTGTGCTCCATAGTTG
3' ss Score
6.45
Exon sequences
Seq C1 exon
ATTTCAGGAGTGTGGCCATCATCAGTGGACAGATCCAAAATGTGGTTTAGTGAGCTTCACAAAGGCTTCAAG
Seq A exon
TTGAAG
Seq C2 exon
TACAAAGATCTCGATGTTGTCCAACTGCGATTCCTTCGGTTACACAGCAACTCTGCCACACAAAGCATCAGCTTGAAGTGTCCCAAAAAACACAGTCCCACTGTTAATCATTGGAAGACGATGCTGCATTTACGAGGAGACTCCTATGAAGAAATCAATCCGCCCCATGTCATCATAACCCGGCATGGTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002295-75-67,75-66-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(11.4=100)
A:
NA
C2:
PF0141013=COLFI=FE(32.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCATCATCAGTGGACAG
R:
CGAAGGAATCGCAGTTGGACA
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]