DreALTA0026175-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077245 | si:dkey-225n22.4
Description
si:dkey-225n22.4 [Source:ZFIN;Acc:ZDB-GENE-120709-30]
Coordinates
chr24:481558-487729:+
Coord C1 exon
chr24:481558-481913
Coord A exon
chr24:487596-487598
Coord C2 exon
chr24:487599-487729
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATGTTAATGTTCTGCTTCAGCAG
3' ss Score
6.25
Exon sequences
Seq C1 exon
CATTAATAACAGTAGACTATATTTTGCTATTCAACTACAATGTAGACAAATAAATAAATCCTGCATTTGGTCTTCTGCACACAGCATCATCATCATCATCATCATCATCATCATCATCAACACTGCAGAGGAATCCCCCAGCCTGACTGAAGCGCTGCTGCTGCTGGCTCACACTTTATACCTGAGGCGGCTCTGAGGGGCGTGTCCCTGTGATGTCATCGGCTGTTCACGTATAAGGAGCGCTGAGTGACCGGAACTATGGCTCCTCCGGTGGAGACAGTGATGTAATGCTTCATCTTCATCTTCATCTCCAGCTCAAGACTTTCATTTTCCTGGAGGCTTTTTTAAAGGAGCAG
Seq A exon
CAG
Seq C2 exon
GGCTCTGAGGATTGGTGTTGAATGTGAACGGCTGGATCTTCAGTTGGGAATGTCGTGGGTTTGGAAATGTGTCCCAGCACTGATTATCCTGGTGTTTTCACACGCTGCCAAGGACGATGATGTTCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077245-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTTCATTTTCCTGGAGGCT
R:
CCAAACCCACGACATTCCCAA
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]