DreALTA0026591-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000097134 | si:dkey-7i4.7
Description
si:dkey-7i4.7 [Source:ZFIN;Acc:ZDB-GENE-131119-71]
Coordinates
chr15:862634-863510:+
Coord C1 exon
chr15:862634-862683
Coord A exon
NA
Coord C2 exon
chr15:863343-863510
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
ATTATTCTGATCTTCAACAGGAC
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTGTGACGTCATGAGGCTGTGCCGCGCTGCTGCTTTCCTTGTGATGAAAG
Seq A exon
NA
Seq C2 exon
GACAAACACAGAAGATCTGCTGAAGCGACTGAGCTCAGACTGTTATAAAGATGGCGTTTATTAAAGAGGAGAGTGTAGACATAAAGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCAGAGTCAAACATGAAGATCCTGAGGAGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097134-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.525
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCTGCTTTCCTTGTGAT
R:
TGACTCTGAAAGCTTCTTCAGTCT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]