DreALTA0026593-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000086668 | si:dkey-7j22.4
Description
si:dkey-7j22.4 [Source:ZFIN;Acc:ZDB-GENE-131125-95]
Coordinates
chr4:43904802-43905569:-
Coord C1 exon
chr4:43905521-43905569
Coord A exon
chr4:43904943-43904945
Coord C2 exon
chr4:43904802-43904942
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ATTGTTTTGTTCATTTTAAGCAG
3' ss Score
6.09
Exon sequences
Seq C1 exon
GACGTCATAAGCCTGCGCCGCTCCCGCGCTGCGATTCAACTGGAGAAAG
Seq A exon
CAG
Seq C2 exon
GATAAAGTGTCCAAACACAGAGAAAAATTCTGCTGAAGCGACTGATCTCCACACTGATGGCGTTTATTAAAGAGGAGAGTGTAGATGTGAAGATTGAAGAAACATTCACAGTCAAACTGGAAGATCTGCAGGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086668-1-6,1-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.069
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCATAAGCCTGCGCC
R:
GTGGAGATCAGTCGCTTCAGC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]