DreALTA0026893-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000076623 | si:zfos-632h11.7
Description
si:zfos-632h11.7 [Source:ZFIN;Acc:ZDB-GENE-141219-34]
Coordinates
chr19:59555-60942:+
Coord C1 exon
chr19:59555-59710
Coord A exon
chr19:60782-60814
Coord C2 exon
chr19:60815-60942
Length
33 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGTGTGTGTGCGCGGTGCAGGCG
3' ss Score
6
Exon sequences
Seq C1 exon
GGCCTCCTGGTGAAGGCAGAACAGGAAGTCCAGGACCATCTGGTCGGCCTGGAAGCCCCGGGAGTCCCGGAAGACCCGGAATACCAGGACCGGTGGGTCCAGCAGGTCCTCCAGGATACTGCGACCAGAACGCCTGCCTGGGGTACAACGTAGGAG
Seq A exon
GCGCTGACCTCACTGACATCGATGTCCCTGTAG
Seq C2 exon
TTCAGCTTCCGCCGAGCTCCTACCAGCCGTACGGGCCGGAGGGTGAGGCGGAGGAGGCAGACCCGTACGGCAGCTACGGCTCCTACTATCAGCCCAACTACCCACCGCCACGGCCCGTCCAGGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076623-70-74,70-72-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(72.7=75.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGGTACAACGTAGGAG
R:
CGGTGGGTAGTTGGGCTGATA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]