DreALTA0027191-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10813687-10815842:+
Coord C1 exon
chr10:10813687-10813896
Coord A exon
chr10:10815716-10815719
Coord C2 exon
chr10:10815720-10815842
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
ACATGATGTTTTAATTTCAGACA
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATTGTGCAGTACATTGGTGAAATCTGCCGCTATCTGCTGAACCAGCCCAGAAAGGACACGGAGCGCAAGCACAAAGTGCGCATGGCACTCGGGAACGGCCTTCGCCAGTCCATCTGGGAGGAATTCACCAACCGCTTCAATGTACCACAGATCGCTGAGTTTTACGGTGCCACTGAGTGCAACTGTAGCCTGGGCAACTTCGACAACAAG
Seq A exon
ACAG
Seq C2 exon
GTGCTTGTGGATTTAATAGCCGAATCCTGCCCTATGTCTACCCTATCCGCTTGGTCAAAGTGGATGAGGAGACCATGGAGCTCATCAGAGGACCTGATGGAGTCTGTATCCCATGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047-11-10,11-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGCAACTGTAGCCTGG
R:
CATCCACTTTGACCAAGCGGA
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]