DreALTA0027416-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000052330 | slc4a2b
Description
solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
Coordinates
chr24:33403861-33406331:-
Coord C1 exon
chr24:33406196-33406331
Coord A exon
chr24:33404060-33404131
Coord C2 exon
chr24:33403861-33404059
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CGCTTTTACTGTATATGTAGATC
3' ss Score
5.72
Exon sequences
Seq C1 exon
GGGCTGTGCTTTTGGACCTGGATCAGAAAACCTTACCCGGCATCTCTCATCAGGTGGTGGAGCAGATGATCATCTCAGACCAGATCAAAGCTGAGGACCGAGCAAACGTCCTCCGTGCGCTCCTGCTCAAACACAG
Seq A exon
ATCTACCCACGATCCTTCGCAGTCTCTGCTTGTGTCTCTGACCCGCTTCCTCCCCTGCTCTCCTTCCCTCAG
Seq C2 exon
TCACCCGAGCGATGAGAAAGAGCACATCACCTCCTTCCCCAGAAACATCTCTGCCGCCAGCCTGGGCTCTCTGATCAGCCACCACCAGAGCAGCTCCAACCATCTGACCATCCCTGAGACCTCCGTCATGGAGCCGCTTATGGGCTCCAGCAGGGCCAGTCAGGACAGCACCGTGCACATTGACATCGATAAGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052330-11-10,11-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.709
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(16.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAAAGCTGAGGACCGAGC
R:
ATGACGGAGGTCTCAGGGATG
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]