DreALTA0027820-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50548581-50549619:-
Coord C1 exon
chr5:50549579-50549619
Coord A exon
NA
Coord C2 exon
chr5:50548581-50548671
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TCTTGTAATTTTTCTAGGAGCGT
3' ss Score
-13.05
Exon sequences
Seq C1 exon
ATTATGAATCTGATGACAGTGGACCAACAGTTAAAAGGGTG
Seq A exon
NA
Seq C2 exon
CGTGATGACTTGGAGACAGAGCGTTTGCGGATTCAGAGGGAGATTGAGGAGTTGGAAAATGCACTTGGTGCTGATGCTGCTTTAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673-6-6,6-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGACCAACAGTTAAAAGGGT
R:
AAAGCAGCATCAGCACCAAGT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]