DreALTA0028022-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000001549 | sp3a
Description
sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
Coordinates
chr9:2764714-2766895:+
Coord C1 exon
chr9:2764714-2764930
Coord A exon
chr9:2766706-2766804
Coord C2 exon
chr9:2766805-2766895
Length
99 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
GATCATACTATACTCTATAGATA
3' ss Score
4.14
Exon sequences
Seq C1 exon
GTGCAGGGAGTTCAGAATCTCCAGAACCTTCAACTCCAGACGGCTCCAACCCAGCAGATAACTCTGGCCCCGGTGCAGACGCTATCTCTGGGTCAGGGTGGCACACCGGTCAGCCTGAGCTCAGGACAGATGCCCAATCTGCAGTCGGTGACGGTTAACACTGTGGGCCAGGCAGGCATTCAGTTCCAGCAGTCCGAGGACACCGACAGCACCGGAG
Seq A exon
ATATTCAGATTAAGGAGGAGCCTGATTCGGAGGAGTGGCCTCTGGACAGTAGCTCTACGCTGAATGCCAATGACCTCTCTCACCTTCGTGTTCGTTTAG
Seq C2 exon
TGGAGGAAGAGATGGAGGCATTGAGCCAGGAGGGCAAACGTCTGCGCAGGGTCGCATGTACCTGCCCCAACTGCAAAGAGGGAGGCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001549-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGACAGATGCCCAATC
R:
CTTTGCAGTTGGGGCAGGTAC
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]