DreALTA0028026-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019516 | sp7
Description
Sp7 transcription factor [Source:ZFIN;Acc:ZDB-GENE-040629-2]
Coordinates
chr6:58628600-58657118:+
Coord C1 exon
chr6:58628600-58628717
Coord A exon
chr6:58656953-58657030
Coord C2 exon
chr6:58657031-58657118
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCTCTCTCTCTCTCTCTCAGTTC
3' ss Score
11.92
Exon sequences
Seq C1 exon
TGCTAGTTATATTCGTTAGCATTAGCGCTCGTCTTTACCAAACAATCGCGATAGTTTACAGTCAAAAACTGGACCAGAATGACTCACTACAAGATTATTTCCGTCATATCATCATCAA
Seq A exon
TTCATCAGGAGGCGGGTCTCCTCTTTTCTCTGCTCCTCATAGAGCCGTCGCTCCTGTTTTTGACGGTATTTGTTTCAG
Seq C2 exon
ACTCCGCGGACCGCCAGCTCTCCTCTCCCGCTTTTGGATTGACCCTCACTGGACTGCTTCCTCCGGGATGGCCGCGTCGATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019516-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCTCGTCTTTACCAAACA
R:
CAGAATCGACGCGGCCATC
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]