DreALTA0028466-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10738079-10738405:+
Coord C1 exon
chr4:10738079-10738138
Coord A exon
chr4:10738310-10738312
Coord C2 exon
chr4:10738313-10738405
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
CCACCTTTTTATGACTCCAGAAG
3' ss Score
5.74
Exon sequences
Seq C1 exon
GCTCCATGTGTTAGCTGTACACTTATCTCCAAATCTACTTGTCCAACTGGTGAATCACTG
Seq A exon
AAG
Seq C2 exon
GCATACAGAAGAGGCTGTGTTTTCAATAAGAAGCAACTTGGCCTGAGCTTACCCAGCATTGGCTGTTCCCACATCTGCAATGACACAAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-22-24,22-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATGTGTTAGCTGTACACT
R:
GCTCAGGCCAAGTTGCTTCTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]