DreALTA0028737-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:53013245-53017250:+
Coord C1 exon
chr3:53013245-53013330
Coord A exon
chr3:53017090-53017092
Coord C2 exon
chr3:53017093-53017250
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACTCTTGAATCTCATTGCAGCAG
3' ss Score
6.33
Exon sequences
Seq C1 exon
AATATCATTGATGACAAATGTGACAGGAAGCAGTGGCCATTCCTGTCTGAGCCTGCACCCATCACCACCACCGCAACTACAGTCAG
Seq A exon
CAG
Seq C2 exon
CGCACGGTTTGGACACTGGCACAAGAACAAGTCTGCCACAGAGTACCGCAGTGGCCCTCGCCTCATCATCTTCGTGATTGGAGGAGTCACACATTCAGAGATGCGCTGCGCTTATGAAGTGACCCGCGCCACTGAGGGCAAATGGGAGGTTCTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-19-19,19-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.0=100)
A:
NA
C2:
PF0099518=Sec1=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGACAGGAAGCAGTGGC
R:
TCTTGTGCCAGTGTCCAAACC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]