DreALTA0028857-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000035427 | surf6
Description
surfeit 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1333]
Coordinates
chr5:32680453-32681003:-
Coord C1 exon
chr5:32680735-32681003
Coord A exon
chr5:32680552-32680553
Coord C2 exon
chr5:32680453-32680551
Length
2 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TATTGTTAACTTTCTGTTATAGG
3' ss Score
-5.01
Exon sequences
Seq C1 exon
ATGTTTTCAATGTAACCATTTCCGGGGATTCTGAGACATCCTGCACATGCGCAAGATCGTACACACGTGGGGCATGTTTCTGAATTCATATATGGCAGAATTATTAGGGTTTTTATTGTTAGTGCGTATTGTGGTCTGATTCGCTTTGTAATTTCCAATGAGGTAAAATGTTTTTATAACCTTCTTCCCCATCCAACTGATGAATTGCCGCAATCAAATCACTGAAGTTGTGCGGTGAAATTTCTGTTGACATTTTCAAAGACTGTGAG
Seq A exon
AG
Seq C2 exon
GAAACATGGCCAGCCTTGCTGCCAAGTATGATTACCTGGAGAAGTTGACACGTAAAGTGTGTGTGTCTCACAAACAGGAGCCAAAGAAAAGAGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035427-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.531
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACTGATGAATTGCCGCA
R:
AGCAAGGCTGGCCATGTTTC
Band lengths:
98-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]