DreALTA0029154-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26086486-26087327:+
Coord C1 exon
chr5:26086486-26086523
Coord A exon
chr5:26087183-26087207
Coord C2 exon
chr5:26087208-26087327
Length
25 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TCTTCTTTTCTATCCAAAAGTCA
3' ss Score
4.18
Exon sequences
Seq C1 exon
GGCACAATGAATTGTCATCATTGACAACACATGGATTC
Seq A exon
TCATGGTCTCATTCTCTTCATCCAG
Seq C2 exon
CACCTAGCGCATCCAGTCTCTGACCTCACTGTGATTGAAAACTCCTGCCATCAGTGACCTCCTCATGTGCATCATCTTCTTGAAGTTCGACCCTCGGCCTGCATCCAAAAATGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF057427=NRDE=PU(6.7=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATTGACAACACATGGATTC
R:
CCGAGGGTCGAACTTCAAGAA
Band lengths:
121-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]