DreALTA0029155-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26117541-26117937:+
Coord C1 exon
chr5:26117541-26117608
Coord A exon
chr5:26117787-26117789
Coord C2 exon
chr5:26117790-26117937
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GATGACTGTGTTGGTTTCAGCAG
3' ss Score
6.4
Exon sequences
Seq C1 exon
GGCCAACGAAGACACTTTGTGTTACTATGGAAACAAGGGCAGCTCAGAGCCCATTCATCTCAAAGCAG
Seq A exon
CAG
Seq C2 exon
GAATCTATGGGTTGAGTAACTCTCTTTTGGAAACTCCGTGGAGGAAACTGCAGCACGGCAAACAGCTGTTCAGCAGTGTAGTGAGCAAAACGCTGCCCCCCGATGGCTTAGTGCAGGAGCTGCTCCACATCCTCAATAACGAGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550-7-12,7-11,7-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.6=100)
A:
NA
C2:
PF057427=NRDE=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACAAGGGCAGCTCAGA
R:
GCAGTTTCCTCCACGGAGTTT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]