DreALTA0029787-1/2 @ danRer10

Alternative 3'ss

Gene

ENSDARG00000042467 | tlk1a

Description

tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]

Coordinates

chr9:3613126-3614536:+

Coord C1 exon

chr9:3613126-3613169

Coord A exon

NA

Coord C2 exon

chr9:3614492-3614536

Length

0 bp

Sequences

Splice sites

5' ss Seq

GATGTAAGT

5' ss Score

9.11

3' ss Seq

GTATTTCCCTCTTTCTGTAGTTT

3' ss Score

8.52

Exon sequences

Seq C1 exon

GGAAGTCTGTCATCCGGGGACCCAAAATTAGCGATTATTTTGAT

Seq A exon

NA

Seq C2 exon

TTTCACGGCGGTAACGGCTCCAGTCCAGTAAGAGGTCTACCGCCG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000042467-18-9,18-8-1/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

  C1=0.933 A=NA C2=1.000

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

NO

Main Inclusion Isoform:

ENSDARP00000107861

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSDARP00000109795, ENSDARP00000114506

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

chr2:171056567-171056572

Human

(hg19)

chr2:171913077-171913082

Mouse

(mm10)

chr2:70752235-70752330

ALTERNATIVE

MmuALTA1033338-2/2

(Tlk1)

Mouse

(mm9)

No conservation detected

Rat

(rn6)

chr3:57053331-57053332

Cow

(bosTau6)

chr2:25435481-25435576

HIGH PSI

BtaALTA0030223-1/2

(TLK1)

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

No suggested primer sequences

R:

No suggested primer sequences

Band lengths:

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]