DreALTA0030140-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077573 | tmprss13b
Description
transmembrane protease, serine 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
Coordinates
chr5:37296541-37296911:-
Coord C1 exon
chr5:37296755-37296911
Coord A exon
NA
Coord C2 exon
chr5:37296541-37296654
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAA
5' ss Score
1.89
3' ss Seq
TTGTGGTTTCCTTCCAGCAGTCC
3' ss Score
6.43
Exon sequences
Seq C1 exon
ACTGAGGCTCCTCCCTCATATGACTCTGTGGTGACTCAGAACATCACACCTCCACCTTCATATCCCAGTCTACAAATATTGTCGACCACTCAAGTCCAACCGTACTACATACCTCAGCCATTACCTCAAATTCCTGCTCCCCATGTAGTAGAGACAA
Seq A exon
NA
Seq C2 exon
TCCCACAACAGAGAACTCAAGCTGTCTCATACAGGAGCAAAAGGTGTTGCTATGGAGGATCCACTGGCATTGCTGCTGTAGTTGTCCTGGTTGTAATTGCTGTGTATCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077573-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAAATTCCTGCTCCCCA
R:
TGGATCCTCCATAGCAACACCT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]