DreALTA0030810-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000026048 | tsc1a
Description
tuberous sclerosis 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9111]
Coordinates
chr5:29057683-29058418:+
Coord C1 exon
chr5:29057683-29057843
Coord A exon
chr5:29058306-29058383
Coord C2 exon
chr5:29058384-29058418
Length
78 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
ATGTACTGTTCTGTTAACAGAAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATGGAAGAGATTTGAGCCACATGATATTGTGATTGAATGTGCCAAAATTTCACTGGATTCTAAAGAGGCGTCATCTGAAGAGGGCTACTCCTCTTTGGCGGATCACATACAGCGACGCGCTGTACACCATAGCCAATCATGTTCAGAGCTCAGTTTCCATG
Seq A exon
AAATCTCATCAGTCACACCAATAGGTGCTATTTGTCAGTCTCTCTCTAAATCACAACCTTATCTCACTGTAACCCAAG
Seq C2 exon
ACTCAGGTTCCAGCGCACAGACCCTCAACAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026048-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.421
Domain overlap (PFAM):
C1:
PF043887=Hamartin=PD(17.5=94.5)
A:
NA
C2:
PF043887=Hamartin=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGATTTGAGCCACATGA
R:
CTGTGCGCTGGAACCTGAG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]