DreALTA0031157-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059722 | ubac1
Description
UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
Coordinates
chr5:50582272-50584168:+
Coord C1 exon
chr5:50582272-50582345
Coord A exon
NA
Coord C2 exon
chr5:50584064-50584168
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTGTTCTTGCTGAAAGAAGAAG
3' ss Score
-3.59
Exon sequences
Seq C1 exon
ATTGTTTAATACTGTTAAAGAAAAGACCTCCACCAGCTCCACCAAAAATGACCGACATATCTTCTGAAGAGAAG
Seq A exon
NA
Seq C2 exon
AAGCAAGACAACAAAGCTCCAGATAAGGATGCCATCCTCAAAGCCACAGCAAGCCTGTCCACTCGTAACACTGACCGTACAGTAACACAGCACAACATCAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059722-3-4,3-3,3-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.903
Domain overlap (PFAM):
C1:
PF138811=Rad60-SLD_2=FE(22.0=100)
A:
NA
C2:
PF138811=Rad60-SLD_2=PD(7.3=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCAGCTCCACCAAAAA
R:
CTGTGGCTTTGAGGATGGCAT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]