DreALTA0032399-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000071113 | xirp2a
Description
xin actin-binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
Coordinates
chr6:9950868-9953510:-
Coord C1 exon
chr6:9953376-9953510
Coord A exon
chr6:9950934-9950936
Coord C2 exon
chr6:9950868-9950933
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
GGTGTTGTCTGTCTTTAAAGCAG
3' ss Score
5.33
Exon sequences
Seq C1 exon
GTCATGGACAGCTCTGAGCCGTGCTCTCTGCCAGGTGGACTGGCCAGCGTGAAGAAACAATTTGAAAGCCAAGAGTTAAGCTCCTCTTCTGCATCCCAAAGCACTGTTGCACAGTACCACTACCAGCAGAGACAG
Seq A exon
CAG
Seq C2 exon
GTGGTGAGCTCATCAGAGGTGACAGTACGAAGCAGTGTTAAAGAAAGCAGTACCTCAAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071113-8-10,8-9,8-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=NA C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCTCTTCTGCATCCCAA
R:
ACACTGCTTCGTACTGTCACC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]