DreALTA0032734-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4688686-4689440:-
Coord C1 exon
chr22:4689295-4689440
Coord A exon
chr22:4688813-4688815
Coord C2 exon
chr22:4688686-4688812
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
3' ss Seq
ACTGTCTGCTTGTCTTCCAGCAG
3' ss Score
9.58
Exon sequences
Seq C1 exon
AAAAAAGTGAACCCAGACCTCCCTGTGGAGATCAAGCCGAGCAATCGTGCACGGAAACTTCTGGAGGTCAAGCTGCGCAAACAGAAGCAGAAATCTGTGCTGAAGAGACAGCAGGAGGACGAGCAGCGCTGGCACATGGAGATGAG
Seq A exon
CAG
Seq C2 exon
GAGGTACGAGGAGGACATGTACTGGAGGAGGATGGAGGAGGAGCAAGTATACTGGGCAGAGCCAAGGCGCAGGATGGCCCCGCCTCCTCTCATGGGCCGGCCCAGCATCCCAGTGCCCCCTCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-19-13,19-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.888 A=NA C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGACAGCAGGAGGACGA
R:
ACTTGCTCCTCCTCCATCCTC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]