DreALTA0032934-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000074146 | zgc:113452
Description
zgc:113452 [Source:ZFIN;Acc:ZDB-GENE-050913-16]
Coordinates
chr2:294927-297766:+
Coord C1 exon
chr2:294927-295323
Coord A exon
chr2:296586-296590
Coord C2 exon
chr2:296591-297766
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TGTGCTCTTTTTACTTCAAGACC
3' ss Score
6.24
Exon sequences
Seq C1 exon
GCGCGAAAGACACGGAAGAAGTGAACTGGTTTTCGGCGCATTCAAGTATGAAACAGAAGGAAACTTTTTGGCTCGGTTTAAAGAATCTTCTGTGGTAGTCATTTAAAATGAAAGTAAATTATTAGTGTAATATTATGCAGCTTTATGCGAGGCGCTAATAGACGCTTTGTTTTTAAATGGAGTCGGAAAATATGTTTTTTCTGCAAGTAAATCGAATCTACACGTAAGAAAAACATTGAAGTATTCACAACCTTAAGCGTGACACGTTTACAGACACGCAGGAAAGCCTAAAGAGCTGAATCTGCTGTGAAGATGGAGATGGTTAAGGAGGACAGTGAAGATATGAGTGATGCAGAATCATGCAGAATGGAGGATGAAGATCCTGAAGAACAAACAG
Seq A exon
ACCAG
Seq C2 exon
GTGGAAGTGAAAGATGAAACTGAAGCGCAAAAAGAAGTGGAGGAGAGTCCGTTCCAGGAGCCTCATCATGTAATGCCTGGAGAAAACTCCGATAATTGCTCTCAGACTGAAGACACAGAAGATAATAATCCCTACGCCTGCCCAGAATGTGGAAAGACGTTCACCTGTAAAAGAGACCTGAAGAGGCACATCAGAATCCACACCGGAGAGAGACCGTTCACCTGCGCTCACTGTGACAGGAGCTTCGCAAACTCCGGAGACCTGAGGAGACACGTGCGGATACACTCCGGCGAGCGGCCGTTCAACTGCGCTCAGTGCAAGAAGAGCTTCACACAGAAGGAAGGACTGAAAGAGCACGCTAAAATACACTCCGGGGAGAAACCTTTCGCATGTCTGCTGTGCGGGAAGAGCTTCACACATCACAACAGTCTGAAGAGACACATGAAGGTGCATTCAGGAGAGAAGCTACACCAGTGTCCTGAGTGCGGCAGGAGGTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074146-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.9),PF079757=C1_4=WD(100=19.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=7.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATCATGCAGAATGGAGGA
R:
GGAACGGACTCTCCTCCACTT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]