DreALTA0033117-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000069957 | zgc:162936
Description
zgc:162936 [Source:ZFIN;Acc:ZDB-GENE-030131-5253]
Coordinates
chr15:969012-971012:-
Coord C1 exon
chr15:970966-971012
Coord A exon
chr15:969171-969193
Coord C2 exon
chr15:969012-969170
Length
23 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTTTTGTTTTCTCTGTTAATGAT
3' ss Score
0.78
Exon sequences
Seq C1 exon
AACTCTGCGCCGTGCTCTTGGGTATGTTGTGATTCTGCAGGAGAAAG
Seq A exon
GATTCTCTTCTTCATGTTGATAG
Seq C2 exon
TGTCTAAAAACACAAACTCCTGAAGCGACTGAGGTATAAAGATGGCGTTTATTAAAGTGGAGAGTGAAGATATGATGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCAGAGTCAAACATGAAGATCCTGAGGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069957-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.600
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCTCTTGGGTATGTTGT
R:
TCACTCTCCACTTTAATAAACGCCA
Band lengths:
105-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]