DreALTA0033154-3/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000073708 | zgc:171551
Description
zgc:171551 [Source:ZFIN;Acc:ZDB-GENE-080220-8]
Coordinates
chr4:72114356-72115093:-
Coord C1 exon
chr4:72114947-72115093
Coord A exon
chr4:72114438-72114495
Coord C2 exon
chr4:72114356-72114437
Length
58 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCGTTGTTTTCATTTTAAAGTGT
3' ss Score
6.47
Exon sequences
Seq C1 exon
CTTTAAAGGCTTAAATATCGGAGCAAACGATCATTCGGCGTTGTTGTTTTATAAGCGATGCCAAATTAAATAATCGTCAGGAAGTCTCGCGTGTAATCTGTTATCTGACAAAGACTTTAATCATAACTAATTAGCTCAAGCGTACAG
Seq A exon
TGTCCAAACACAGAGGAAAACTCCTGCTGAAGCGACTGATCTCCACACTGTTATAAAG
Seq C2 exon
ATGGCGTTTATTAAAGAGGAGAGTGAAGACCTGAAGATTGAAGACACATTCACAGTCAAACAGGAAGTTCCCGAACAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073708-2-3,2-2,2-1,2-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAAGTCTCGCGTGTAA
R:
CGGGAACTTCCTGTTTGACTGT
Band lengths:
145-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]