DreALTA0033157-1/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101562 | zgc:171570
Description
zgc:171570 [Source:ZFIN;Acc:ZDB-GENE-080220-9]
Coordinates
chr2:204400-204848:-
Coord C1 exon
chr2:204727-204848
Coord A exon
NA
Coord C2 exon
chr2:204400-204468
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
CACACCGGGCTGCCTCACAGACG
3' ss Score
5.6
Exon sequences
Seq C1 exon
TTCGCTCATTCCTCCAGTTCAGCAGATGGCGCTGCTCTGCTTCAGCTTTAACCGCGAATAACAACACGGAGAGGAAGAAACAACCGCTGCAGTCGCTGTTGTGTGGTGATTGCTGGATTTAG
Seq A exon
NA
Seq C2 exon
ACGGCTCTCTTCAGCACTGCAGACTGATTATAAAGCATCATCTCGAGGACAACATCAGCTCCAGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101562-0-3,0-2,0-1,0-0-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCATTCCTCCAGTTCAGC
R:
CGTGTCTGGAGCTGATGTTGT
Band lengths:
189-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]