DreALTA0033517-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52453793-52454036:+
Coord C1 exon
chr7:52453793-52453840
Coord A exon
NA
Coord C2 exon
chr7:52453954-52454036
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
TTTTTTTTCTTTGACAGCAGGAG
3' ss Score
5.45
Exon sequences
Seq C1 exon
ATAATGGAAAAGTGATAAATGAAGCAAACAACAGTGTTTCCAAAGGAG
Seq A exon
NA
Seq C2 exon
GAGAGAAAAATTTAATAGGCACAAGGAAATGCCCCAGATGTCAGAATGTGTTTCCTTTGGAGCCTTTAAAGATTCATATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-10-10,10-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGTGATAAATGAAGCAAACA
R:
ACACATTCTGACATCTGGGGC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]