DreALTA0033523-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52441648-52442118:+
Coord C1 exon
chr7:52441648-52441813
Coord A exon
chr7:52441895-52441908
Coord C2 exon
chr7:52441909-52442118
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TTTCTCTTGATCCTCAGTAGCCG
3' ss Score
3.27
Exon sequences
Seq C1 exon
ATGTCTGAGTTGTTTATGGAGTGTGAAGAGGAGGAGTTGGAGCCATGGCAGAAAGCAATTCCTGAAATAAATCTAATCGATCTGGATGATGATGATGAGGATGATGATGAACCAATATTCGTTGGTGAAATCTGCAGCTCCAAGCCTGCAGCCCAAACAAAATCAG
Seq A exon
CCGCTAACCAACAG
Seq C2 exon
AACCAGCGAAATGTCCCAGTTCAGAAACCTGCAACGGTGACTACAGTGCAAAATACACCGCAAGCCCCGCTGAACCCTCCTAGGGTGGCTGCAGGTCCTACAATCATGGTCAGAAGTACAGCTCCATCAGGAGGAAACCCTATCCTCATCCCTCTCAACACAACTCTAGGACCACAAACAGCCCCACAACCCATTATTATTAACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-6-4,6-3,6-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCTGCAGCTCCAAGCCT
R:
GGCTTGCGGTGTATTTTGCAC
Band lengths:
106-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]