DreALTA0033524-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52453429-52453840:+
Coord C1 exon
chr7:52453429-52453659
Coord A exon
NA
Coord C2 exon
chr7:52453793-52453840
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTCTTTTTATGACCAGCAGATA
3' ss Score
5.23
Exon sequences
Seq C1 exon
CTGGTCAGCAGATAGTGCCACAGGTCAGTGTTGCACCAAAGCCAGGGGTGATTCACAGGCCTCAAGTGAAGCTCATCCAAGACAATGTAGTGACCTTGTCCAATGTACAAGCCCCAGCTAACCATTCTTCTCAGTCCCGCACTATTTCAGTTTCTCAAAACACACCAGGGATCATCCCAACAACACTACTAAAACCGAAAACCTCATCCATGCAGATTATGAACAGTAGAG
Seq A exon
NA
Seq C2 exon
ATAATGGAAAAGTGATAAATGAAGCAAACAACAGTGTTTCCAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-9-8,9-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAACACACCAGGGATCATCC
R:
TGTTTGCTTCATTTATCACTTTTCCA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]