DreALTA0033638-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000042129 | zp3a.1
Description
zona pellucida glycoprotein 3a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040727-1]
Coordinates
chr20:34090548-34090811:+
Coord C1 exon
chr20:34090548-34090633
Coord A exon
NA
Coord C2 exon
chr20:34090711-34090811
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTGCTTTCTCTTCACAGCAGGTA
3' ss Score
7.43
Exon sequences
Seq C1 exon
TTGGGTCTCTGCTGATGGAGGTGATCAAGTGTGTGCTTGCTGTGATACCAGCTGTGGACAAAAGACTCAGTTAACCGTAGCTCCAG
Seq A exon
NA
Seq C2 exon
GTATTCAGTATGAGGGAAAAGCCCAAGTTGGTCCCTTCCAAATCCCTGCACATACATCTGGCATTAAAGTGGTTTCTTTTTAAATAAAAAAATATTAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042129-8-10,8-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCTGTGATACCAGCTGT
R:
GTGCAGGGATTTGGAAGGGAC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]