DreALTD0000009-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21293530-21294061:-
Coord C1 exon
chr15:21294010-21294061
Coord A exon
NA
Coord C2 exon
chr15:21293530-21293613
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
3' ss Seq
TCTGTCTCTCTAATTCACAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GCTGAAGGAACTGAAAAGACAGAGACCAACAGCTGGTTACTGTGTCCAAAGG
Seq A exon
NA
Seq C2 exon
GTGACAGTCTCTCAGAGGAAATGAACCTGACTCTTCCTAAAGATGTGATAGAGGGATCAGCAAAATCCTCAGTTTCAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685-21-21,22-21,23-21-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGCTGGTTACTGTGTCCA
R:
ACTGAGGATTTTGCTGATCCCT
Band lengths:
99-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]