DreALTD0000208-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000101310 | BX004873.4
Description
NA
Coordinates
chr4:64241131-64243896:+
Coord C1 exon
chr4:64241131-64241231
Coord A exon
chr4:64241232-64241294
Coord C2 exon
chr4:64243754-64243896
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATATATGTCTCCTCCTCCAGTGA
3' ss Score
8.15
Exon sequences
Seq C1 exon
CTTTATCTGAGCCACATACAGACAGCCAATTAGCTTTCGCTGATCTGCGTGCAGGCAAATATCCCGCCCATGGCGCTCAGTCTGAGGCAGAGAGTACAGAG
Seq A exon
GTTTGTTTGCTGTTTATCACCTTTAATTCCACTTATGTTACGGGTGTTGTGCATCTATTCAAA
Seq C2 exon
TGAAGCTCCTCCTCCTCCAGTTCGGCTATAAACACTGGAATTTTCATATCAGGCTCCAGTGAAGAGTTTATTGAAGGACAGCAGGAATATGAGTGATCCAGAACCCTGCAAAATTAAAAATGAAGACTCTGAACAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101310-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.789
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTCTGAGGCAGAGAGT
R:
TGCAGGGTTCTGGATCACTCA
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]