DreALTD0000485-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000102090 | CABZ01021453.1
Description
NA
Coordinates
chr4:71277603-71278872:-
Coord C1 exon
chr4:71278772-71278872
Coord A exon
NA
Coord C2 exon
chr4:71277603-71277751
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GTTTTGTTCATTTTAAACAGGAT
3' ss Score
8.91
Exon sequences
Seq C1 exon
TAGTAAACAAAAAGAACTTTTATTTTGGCGTGGCGGTGTGACGTCATAACGATGCGCCACTCTTGTGCTGCGATTCTCACTTGTGATTCAACTAGAGAAAG
Seq A exon
NA
Seq C2 exon
GATAAAGTGTCCAAACGCAGAGAAAACTCCTGCTGAAGTAACTGATCTCCACACTGTTATAAAGATGGCGTCTATTAAAGTGGAGAGTGAAGACCTGAAGATTGAAGAAACATTCACAGTCAAACAAGAAGATCTGCAGGAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102090-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.549
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCTTGTGCTGCGATTCT
R:
TCTTCAGGTCTTCACTCTCCACT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]