DreALTD0000750-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50502381-50507923:+
Coord C1 exon
chr9:50502381-50502447
Coord A exon
chr9:50502448-50502476
Coord C2 exon
chr9:50507832-50507923
Length
29 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GTGAACTTTATTTTTATCAGGGG
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGGCAGACAATGGAGACAGAGAGCCAGAGACACAAACAGCAGACACTGATCCAGTCATGGGAACAT
Seq A exon
GTAAGATTGGAAATACTCAAGCGTCGCCA
Seq C2 exon
GGGTCTGAAGCGTCATCGCAGGAAGTATCAGACGTCTTTCATTCAGCAGAAGAATGAAGCTCTTGGACATGATTAAATTCTCCACTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829-20-20,21-20,22-20-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGACACAAACAGCAG
R:
TCCAAGAGCTTCATTCTTCTGCT
Band lengths:
112-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]