DreALTD0001052-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000104263 | FMNL1 (2 of 2)
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr24:36720761-36722298:-
Coord C1 exon
chr24:36722215-36722298
Coord A exon
chr24:36721824-36722214
Coord C2 exon
chr24:36720761-36720895
Length
391 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
ACATTTCCGCGTTTTTACAGATA
3' ss Score
10.15
Exon sequences
Seq C1 exon
GTGGGCCGAGGAGTTTCTAAACGAAGAAAACAACGGCTTGGATGTACTAGTGGACTACCTCTCTTTTGCTCAACGCGCAGTCAT
Seq A exon
GTATGCACACAAACACACATACACTTGTTTTTTATTTTTAAATTGTGGGCATATTATATAGGTTTACATTGCTTTTATACTGTACAAACAGTATTTTGTATTGCCCTATACTTAACCCCTTCACCAGTGGTGGCCAATCCTGTTCCTGGAGAGCCAACTTCCTGCAGATTTCAGTTGCAACCCATATCAAACACACCTGCCTGTAATTATCACGTGGTGTTCAGGTCCTAATTAACTGGTTCAGGTGTGTTTGATATGAGTAGCAACTGAAATCTGCAGGAAGTAACAGATAGTAATTGCTCTTAAGAGATAACTACTTACAAAGTGCATATCCATGGTGCCGATTTGGATCAGTCAAAAGTTGAACACTTAAGTGGAACGTTCTTGGACG
Seq C2 exon
ATATGATATGGACAGCAGCTCTGAAAACGGAAGCTTTGAGGAGAAATCAGTGGAAGATCTGACCACGAGTGCGACAAACTCACCTACCCACAATTCCCCTCGCTCAGCACGGCCCTTCACCACACGGTCAGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104263-4-3,5-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.587
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(22.2=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(12.7=34.8),PF063718=Drf_GBD=PU(2.8=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCGAGGAGTTTCTAAACG
R:
GTGTGGTGAAGGGCCGTG
Band lengths:
207-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]