DreALTD0001223-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000027609 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr16:45306858-45321031:-
Coord C1 exon
chr16:45320934-45321031
Coord A exon
chr16:45320930-45320933
Coord C2 exon
chr16:45306858-45306959
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GTTTGGTTTATGTCCTTCAGGAC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTCTGAAAGAACATCAAGTCGGATTTTTTGAGGAGGAATCATCTATTGGAAGCTTATATTTCAGCTTTCTTATTTGGATGAACATGTCAGAGAAGAAG
Seq A exon
GTCG
Seq C2 exon
GACGTCCAGGCATGAGCATCTTCAGTCCATGCCGGGTGGTCGCTGCAGTTTCTCTGATCTTGATTATTCTGGGAGGGCTGGGAGCCGCCATCTGGGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027609-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGAATCATCTATTGGAAGC
R:
GAAGATGCTCATGCCTGGACG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]