DreALTD0001345-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000052155 | LRRC8A (2 of 2)
Description
leucine rich repeat containing 8 family, member A [Source:HGNC Symbol;Acc:HGNC:19027]
Coordinates
chr5:64161567-64164431:+
Coord C1 exon
chr5:64161567-64161639
Coord A exon
NA
Coord C2 exon
chr5:64162310-64164431
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
AGCAAATATTCTCATTTCAGGTA
3' ss Score
7.06
Exon sequences
Seq C1 exon
GATATCTGTGTCCCATCCTGACAAAAAGGACTGTGATGAGTGCCAGTTCCTGATTGGACATGTGGAGCACTAG
Seq A exon
NA
Seq C2 exon
GTAAATCATGATCCCCATAACTGAGCTACGCTATTTTGTGGACACGCAACCTACATATCGCATCCTAAAGCCATGGTGGGACGTGTTCACCGACTATTTATCCGTCATAATGCTGATGATCGCAGTGTTCGGGGGAACTCTTCAGGTCACGCAGGACAAGATGATCTGTCTGCCCTGCAAATGGGTAGTTAACAAGACCTGTAGAAAGTATTTCAACGCAACCTTTTCCGTGCCATTGGCTCTTGAGCCTCAAGGAATCCAGTACGACCTCGATCGCCACCAGTATAACTATGTCGACGCTGTGTGCTATGAAAACAGGCTTCACTGGTTCGCTAAGTATTTCCCGTATTTAGTGTTGCTGCATACACTCATCTTTCTGGCTTGCAGCAACTTCTGGTTCAAGTTCCCTTGGACGAGCTCTAAACTGGAGCATTTCGTGTCTATCCTACTCAAGTGTTTTGACTCACCGTGGACCACAAGAGCTCTCTCTGAAACCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052155-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125343=DUF3733=WD(100=9.2),PF125343=DUF3733=WD(100=8.5),PF127992=LRR_4=WD(100=6.0),PF138551=LRR_8=WD(100=8.7),PF127992=LRR_4=WD(100=6.4),PF138551=LRR_8=PU(18.6=1.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGTTCCTGATTGGACA
R:
TCGAGGTCGTACTGGATTCCT
Band lengths:
307-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]