DreALTD0001601-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50951902-50956759:+
Coord C1 exon
chr18:50951902-50952002
Coord A exon
NA
Coord C2 exon
chr18:50956502-50956759
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTGTAA
5' ss Score
-14.5
3' ss Seq
ACTGTGTGTGTGTTCATCAGGTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
GCACACGCGAGCAGATCTGCGTCAACACCTATGGAGGGTTTCAGTGCGTCAAAGTGGAGTGTCCAAACACACGGGACGCCACCTACGCCAAAACATCTGCA
Seq A exon
NA
Seq C2 exon
GTGCGCAGTGATGCGCGGCGGTGCGTGGTGTGTGTGCCCGCGGGCTCCTGTTCTCCTGCGCCGCTGGCTGTGTGTGGGGGGCGGGGCCTCTGGTGGGCAGGCACAGAGAGGGGTGCGGTTCTTCAGCTCAGAGGCTCCGCCCACTCTGCCCGCCCGTGCCCGCGTGCTGATCTGCGGAGGCGGAGTGGTGGGCACGTCGGTGGCGTATCACCTGGCCAAACTGGGCTGGACAGAGATCCTGCTGCTGGAGCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0126619=DAO=PU(8.9=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCGTCAAAGTGGAGTGT
R:
CACACACACCACGCACCG
Band lengths:
96-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]