DreALTD0001685-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71259721-71260520:-
Coord C1 exon
chr5:71260351-71260520
Coord A exon
NA
Coord C2 exon
chr5:71259721-71259922
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGCAGCAG
5' ss Score
-11.51
3' ss Seq
TGTGTGTTGTCTTGGTCCAGGAG
3' ss Score
8.11
Exon sequences
Seq C1 exon
TGACGGACACGCCAGCGGAGTCAGCCTCCAGTCAGGATTATAAAGATGAAGGCTGTAACTTCCACAATAATGATGATGAGGATGATGATGGTGGCGAGTCCACGTCTCCTGTGCCGGAGTACAGCCGACATCAGAAGCCTGTGCCGCCACGCTTCCAGAAGCAGCAGCAG
Seq A exon
NA
Seq C2 exon
GAGCAGGTGTATAAGCTGGCGTCGTGGCAGCAGTCGGCTCACCCAGCTCAGCCCAGCTCTGCTCACCCGCAGCGGGGCTTCTACCCTCCTCATGTGCTGGGCTTCGACCCACGCTGGATGATGATGCCACCATACATGGACCCCCGGCTGGCACAGGGCTGCTCTCCTGTGGACTACTACCCTCCTGGAGTCCACTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-13-16,14-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTGTGCCGGAGTACA
R:
CACGACGCCAGCTTATACACC
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]