DreALTD0001691-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71232141-71239449:-
Coord C1 exon
chr5:71239360-71239449
Coord A exon
chr5:71239213-71239359
Coord C2 exon
chr5:71232141-71232792
Length
147 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
GTGTGTGTGTGTGTGTTCAGGAG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTGTCGGGTCCTCAGGGCAGTATGGTGATGCACATGCGTCCCCCCAGCAGCGGGCCCTTCCCCACCCCCATCCAGCGGCCCATCATGCAG
Seq A exon
GTCAACAAGCCCGTGATCATCCGCTCCCCGCCGTACCCCGGCCCAAACACCGGCCCCGCACACACACACGCACACACACACAACCCTGAGGGCCCCGGCAAGGGCCCGGAGGACGGCCTGAAGGTGAGCCACCCACTCTGAGCATAG
Seq C2 exon
GAGTGTGTGGCGTCAGCAGCACCAGTGAAAGCGTCAGCGTCTCGCAGCGGAGCCATCAAACCACAGCCGCTCAAACTGGAGGAGGGAAAAGCCTGACCTGCAGGACTTCCTCATCCCGTCTCTCTCTCTCTCTCCGGACTCACAGGACCACCAACCAATCAGATCACAGTATCAGCCATCACATAGAGAAATCTCCATATCTATCTATATATAAAAGTCTACTCTATATACACACAGACACGCTGGTGTTGGACTGTCCGCTGGGTGCAGATTCCACAAGACCGCCTTTATTTATTTACATCCTCCAGTGCAGAAGAACGGTTCCTCCGCAAGCCCACATCACACAGCAACAGGAAGTGCAGCTCACGCATTGCCACGCCCACATTGCCAAACTGAGCCAGCTGATTGGACTCGAGGTTTTGATTGACACATGCTCCGGAGCTGCGGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGACATTGGTCATTTTTACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-40-44,41-44,42-44-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCAGGGCAGTATGGTGA
R:
TGATTGGTTGGTGGTCCTGTG
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]