DreALTD0002024-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000013526 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr7:24064392-24064922:+
Coord C1 exon
chr7:24064392-24064465
Coord A exon
NA
Coord C2 exon
chr7:24064731-24064922
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
TTTTTTTTGCTGTGGTGCAGTTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
CTCTTTCCTGTCCTCATCCCACTCTCCCAAAATATGGAATCCTTAAAGGGGCAAACTTCACATACGGAAGCAAG
Seq A exon
NA
Seq C2 exon
TTGTGAGAAGGGGTATGTTCCTTTGGAGCCAATAGAAAGCCAGTGTCAATCTGATTTGAAATGGAGCAGAGAACCTCATATTTGTCAGCCTATAACCTGTGGTGAGCCTCCAGTGGTGGACTATGCAGAGTATACGCTCAATGGGAAAATCTACCGCTCTACACTATCCTACACCTGCATAGAGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013526-28-32,29-32-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(46.3=86.2)
A:
NA
C2:
PF0008415=Sushi=PD(51.9=43.1),PF0008415=Sushi=PU(57.4=47.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCATCCCACTCTCCCAA
R:
GGCTCCAAAGGAACATACCCC
Band lengths:
95-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]