DreALTD0002030-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000063713 | SYNGAP1 (1 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr19:260533-261232:+
Coord C1 exon
chr19:260533-260677
Coord A exon
chr19:260678-260683
Coord C2 exon
chr19:261088-261232
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGAG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GACTTCCTGTCTGACATGGCCATGTGTGAGGTGGATCGTTTCATGGACCGTGAGCATCTGATCTTCAGAGAAAACACTCTCGCCACTAAAGCCATCGAGGAGTTCCTGAAGCTCATCGCACACCGCTACCTGAAGGACACCATCG
Seq A exon
GTGAGG
Seq C2 exon
GAGAGTTCATCCGTGCGCTGTACGAGTCTGAGGAGAACTGTGAGGTGGACCCGATGCGAACGCCTCCGTCAGTGCTGGCCGATCATCAGGCTAACCTGCGCATGTGCTGTGAGCTAGCGCTCTGCAAGATCATCAACTCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063713-13-12,14-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(27.3=95.9)
A:
NA
C2:
PF0061614=RasGAP=FE(27.9=100),PF067666=Hydrophobin_2=PU(42.6=40.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCACTAAAGCCATCGAG
R:
TCTCCTCAGACTCGTACAGCG
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]