DreALTD0002035-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000069765 | SYNGAP1 (2 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr16:45623304-45636902:+
Coord C1 exon
chr16:45623304-45623398
Coord A exon
chr16:45623399-45623680
Coord C2 exon
chr16:45636781-45636902
Length
282 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCTGTGTTTTTTCTTCCCAGAGT
3' ss Score
10.25
Exon sequences
Seq C1 exon
ACGCCGCTCGGCTCCGGCGGAAAAGCATCGCCACCGGGAAGCAGCCAAGCATGGAGATCCCACCCACTGCCCCCCCACAACCCTTCCGACAATCC
Seq A exon
GTGAGTAACCCACCTTTCCGTCCCCGGTCCCTCTCTCCATCCCTGTCCCTATCGCTGCCGTTCGCTCCATCGCCCCTGTCGCCCTCGCTGTCCCCGTCCCATTTACAGTCCCAAAAGCGAATCAGCACTCCTCCGCTGCCTCGTTCTCTCCCTCTCTCCCCGAGCGTCTCTCTGACTCTCCCACCCTCTGTCCCGCTCTCCCACTGGGCTGCTGGTGAGTGGAAGGTTGTGGGTTCTAATCCAGGGACGGGATCCAGTGTGGCGGCACTGCCCTCTCTTGAG
Seq C2 exon
AGTTTCCTCAGTAGAAGACTGAAGGGGTCCATTAAACGGGCCAAGAGTCAGCCCAAGCTGGACCGAACCAGCAGCTTCCGCCACATGATCCTCCCTCGCTTCCGCAGCGCCGACCAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069765-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(26.1=70.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGCGGAAAAGCATC
R:
GGAAGCGAGGGAGGATCATGT
Band lengths:
188-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]