DreALTD0002177-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41146065-41146383:-
Coord C1 exon
chr24:41146273-41146383
Coord A exon
chr24:41146242-41146272
Coord C2 exon
chr24:41146065-41146165
Length
31 bp
Sequences
Splice sites
5' ss Seq
CGAGTACAG
5' ss Score
-4.05
3' ss Seq
TGTTGTTTCTGTGTTTGCAGCTT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GCTGTGTGTTATTACGAGACTGCTCTGAAGAGGGATTCTCTGGACTGTGTGTTGAGTTTAGAGCTTTCTGAACTGCTGCTGAAGCTGAAACGCTTTAACAGAGCTCAGCAG
Seq A exon
GTCCTGGAACAGGCGCTGGATCATCAGCCGA
Seq C2 exon
CTTGTGCATTGGCTGCAATGATGAATGATGTTAAAGCTCTCCGAGTGTTGGTTAAAGTGCTGCGGGCCAGGGATGAGTCTGCTCTGGACGTCATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541-14-15,15-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(68.7=95.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTTTAACAGAGCTCAGCA
R:
TGACGTCCAGAGCAGACTCAT
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]