DreALTD0002303-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000105176 | ZNF507 (10 of 11)
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr1:57891525-57892650:+
Coord C1 exon
chr1:57891525-57891625
Coord A exon
NA
Coord C2 exon
chr1:57892483-57892650
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GATGTGGTGTTTGTGTGCAGATG
3' ss Score
8.24
Exon sequences
Seq C1 exon
GATAGCTGAGCGGTACTGTAGGGGGCGCTGTGGTGATTTTCATCTACCGGACCGCCAAACCACGGAAGAAATAAACACTGGAGCCCACGATGGAAGCGATG
Seq A exon
NA
Seq C2 exon
ATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAGCTGAGAGAAAGAGGAGAGAAACTCCAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105176-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF066986=DUF1192=WD(100=89.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACACTGGAGCCCACGATG
R:
CTTTCTCTCAGCTTGGCCTCC
Band lengths:
176-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]