DreALTD0002311-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000104904 | ZNF507 (9 of 11)
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr1:57867259-57870808:+
Coord C1 exon
chr1:57867259-57867499
Coord A exon
chr1:57867500-57867604
Coord C2 exon
chr1:57869524-57870808
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TAAAGTTCTGCTTCTTTCAGATG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACACGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGACTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCCAGAGGATGATG
Seq A exon
GTGATTATGATGAAGATGGGAAACATGATGGTGAAAACGAAGATGAGGATGATAATAATGCGGAAGATGGAAAAAATTATGATGATGATGAATTTATTCCTGCAG
Seq C2 exon
ATGACAACATTGGATCGTCTGATGAAGAAGCGCCTTTACCTTCGAAAGATGAGCTGAAGGCCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATACACCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGGGAACCTGGAGGCTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCGAGATGAGCTTCAACCACAAACCCCACATGAAGAACCACATCCGCATTCACACCAAAGAGAGGCCGTACCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104904-3-3,4-3,5-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.793 A=NA C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF051298=Elf1=WD(100=18.9),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF102764=zf-CHCC=WD(100=6.8),PF0013017=C1_1=WD(100=15.0),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.4),PF0013017=C1_1=WD(100=15.0),PF134651=zf-H2C2_2=WD(100=7.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCAGGATCATCAGAGCT
R:
ACAGGAGGTGCAGGAGAAACT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]