DreALTD0002326-2/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000090942 | ZNF639
Description
zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]
Coordinates
chr4:70977212-70982090:-
Coord C1 exon
chr4:70981990-70982090
Coord A exon
chr4:70981971-70981989
Coord C2 exon
chr4:70977212-70977350
Length
19 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TCTCATATTAAACTCGACAGTGT
3' ss Score
2.79
Exon sequences
Seq C1 exon
ACTTCATTCAGTTCTGCGTCCGACACACTTTTGTTTGAGCGCTTTTATTTTGTTTGGACGTCGTGACGTTATAAGGTCGCGCCGCGCCTCCTCAGTCGTCT
Seq A exon
GTGAGTCCTCTGATGAAAG
Seq C2 exon
TGTCAAGACCAAGAAAGAGCTTCTGGAGATTCGACGTGAGATACTGTAATCATAGAGATGGCGTTTATCAAAGAAGAAAGTGAAGACATGAAGATTATAGCAGTCACAGTCAAAGATGAAGATGCAGAGGAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090942-0-0,1-0,2-0,3-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.607
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACTTTTGTTTGAGCGCT
R:
TCACGTCGAATCTCCAGAAGC
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]